% ----------------------------------------------------------------
% MQ Thesis Template (thesis.tex / mqthesis.cls)
%
% © 2025 Kelly L. Williams. All rights reserved.
% Please retain this header when redistributing or adapting the template.
%
% Authorship and design:
% • Typography, page layout, and chapter style — Kelly L. Williams
% • Documentation, structure, and student-facing guidance — Kelly L. Williams
% • LaTeX coding support — developed with assistance of ChatGPT (GPT-5),
% under the direction of Kelly L. Williams
%
% Affiliation: Macquarie University • kelly.williams@mq.edu.au
%
% Template aligned with Macquarie University 2025 Thesis Guidelines:
% https://students.mq.edu.au/study/graduateresearch/prepare-for-completion/prepare-for-submission
% ----------------------------------------------------------------
% ----------------------------------------------------------------
% Compile: pdfLaTeX (Overleaf default). No XeLaTeX/LuaLaTeX required.
% Class: uses mqthesis.cls (consolidated)
% ----------------------------------------------------------------
%
% ----------------------------------------------------------------
% QUICK CLASS OPTIONS (put inside \documentclass[...]):
% Presets (choose one):
% printtwoside — for duplex printing (inner=35mm, outer=20mm, top/bottom=20mm)
% printoneside — for single-sided printing (left=35mm, right=20mm, top/bottom=20mm)
% submission — for online submission (left/right=30mm, top/bottom=20mm)
% Toggles (optional, add any combination):
% airy — vertical air (include head/foot; heightrounded)
% double — double line spacing (default is 1.5)
% blacklinks — all links black (default is coloured links)
% hidelinks — link boxes hidden (no colour)
% Originality choice (choose one):
% standard — standard Statement of Originality (default)
% cotutelle — cotutelle Statement of Originality + title page
%
% EXAMPLES:
% \documentclass[printtwoside,airy,standard]{mqthesis}
% \documentclass[printoneside,double,blacklinks,cotutelle]{mqthesis}
% \documentclass[submission,hidelinks]{mqthesis}
% ----------------------------------------------------------------
\documentclass[printtwoside,airy]{mqthesis}
% --------------------------------------------------------------------------
% Cotutelle (if required)
%
% How to enable:
% 1) Add the class option [cotutelle] to \documentclass, e.g.:
% \documentclass[printtwoside,airy,cotutelle]{mqthesis}
%
% 2) Provide a single combined logo (both universities side-by-side), then set:
% \mqsetup{logo=CombinedLogos.pdf, logowidth=90mm}
% Adjust logowidth until the visual balance looks right.
%
% 3) Specify partner details for wording on the Statement of Originality, and remove comments:
% \providecommand{\mqPartnerUniversity}{University of Example}
% \providecommand{\mqCotutelleDate}{22 August 2024}
%
% Notes:
% • With [cotutelle], the title page shows “Cotutelle PhD Program” and the
% originality statement includes the cotutelle wording.
% • Keep these commands in the preamble (before \begin{document}).
% --------------------------------------------------------------------------
% -------- Thesis metadata (appears in PDF metadata and title pages) --------
\mqsetup{
title = {Your Thesis Title},
author = {Your Name},
date = {August 2025},
faculty = {Faculty of Science and Engineering},
department = {Department / School},
degree = {Doctor of Philosophy},
email = {your.name@hdr.mq.edu.au},
keywords = {keyword1, keyword2, keyword3, keyword4},
university = {Macquarie University}, % defaults to MQ, override only if needed
logo = {MQlogo.pdf}, % change for logo size, 36mm optimal for 2-4 line title
logowidth = {36mm},
signature = {frontmatter/example_signature.png},
signatureheight = {16mm},
% signaturedate = {22 Aug 2025}, % date on originality statement page
% supervisors = {Prof. Jane Smith, Dr. John Doe}, % reserved for future use
}
% --------------- Bibliography style (students can change this) --------------
% Common styles: apalike, plainnat, unsrtnat, abbrvnat …
\bibliographystyle{apalike}
% ----------------------------------------------------------------
% Optional extensions for advanced tables / landscape / phonetics
% Uncomment only what you need. Keep the preamble tidy.
% If you want to use other packages than those listed here, check first for compatibility
% with existing loaded packages.
% --- Multi-page tables and helpers ---
% \usepackage{longtable} % Core package for tables that span multiple pages
% \usepackage{array} % More control over column types and spacing
% \usepackage{threeparttable} % Add table notes/footnotes under a table
% \usepackage{threeparttablex} % Extend threeparttable to work with longtable
% \usepackage{makecell} % Easy multi-line cells and formatted headers
% --- Landscape pages (incl. long tables) ---
% \usepackage{pdflscape} % Rotate pages in PDF (tables/figures can go sideways)
% --- Phonetics (IPA) ---
% \usepackage{tipa} % Typeset International Phonetic Alphabet (IPA) symbols
% \usepackage[T1]{fontenc} % Recommended encoding when using TIPA in text
% ----------------------------------------------------------------
\begin{document}
% Title + front matter (order enforced; optional files included if present)
% Delete front matter directory .tex files that are not needed (e.g. covid_statement.tex, list_of_publications.tex, ...)
\MakeMQFrontMatter
\tableofcontents
\listoffigures
\listoftables
% --------------------------------- Body -------------------------------------
\mainmatter
\include{chapters/chap_intro/ch_intro}
\include{chapters/chap_methods/ch_methods}
% Duplicate the results chapter folder if you need multiple results chapters,
% and add matching \include lines here in order.
\include{chapters/chap_results1/ch_results1}
\include{chapters/chap_publications/ch_publications} % formatted for thesis-by-publication
\include{chapters/chap_discussion/ch_discussion}
% -------------------------------- Appendix ----------------------------------
\appendix
\include{chapters/chap_appendix/ch_appendix}
% ------------------------------ Bibliography --------------------------------
\cleardoublepage
\phantomsection
\addcontentsline{toc}{chapter}{\bibname} % ensure References appears in ToC
\bibliography{references} % Change the filename if syncing with a reference manager export.
\end{document}
